Overview
MAPsDb is a comprehensive functional RNA database of Medicinal and Aromatic Plants. In current version, MAPsDb contains 168819 mRNAs, 124475 lncRNAs, 9185 miRNAs by analysing 365077 nucleotide transcripts from 27 MAPs species ranging from eudicots to gymnosperms. Moreover, it also comprise gene ontology, physiochemical properties of mRNAs, secondary structures of lncRNA and precursor miRNAs, along with convenient data accesses and powerful search engines. MAPsDb also contains a cncRNADetector pipeline which is used for identification of different transcipts such as coding, lncRNA and miRNAs by combining entire filtering steps into a single platform. MAPsDb is a knowledgebase database and will provide novel insights into medicinal and aromatic plant research and will benefit the whole research community.
Welcome to cncRNADetector
 2. Processing
Run to process the input and wait for the result
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 3. Visualize
Use the Task ID to fetch your result. See the processed result online
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 4. Download
The processed result can be downloaded in a separated file. The intermediate steps could also be downloaded as a zip file
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MAPs Species
Plumbago zeylanica
Ocimum basilicum
Crocus sativus
Mentha x piperita
Aloe vera
Gloriosa superba
Plantago ovata
1228
VISITED PORTAL
1699
SUBMITED TASK
1
VISITED COUNTRIES
Why cncRNADectector
cncRNADectector pipeline
cncRNADetector is an accurate bioinformatics pipeline for identification of coding and noncoding RNA such as lncRNA , miRNA and other by combining entire filtering steps into a single platform. It takes SRA files or assembled transcript sequences in FASTA format as input and gives the output of every step in separate files. The steps involve various filtering strategies and utilization of Coding Potential Calculators such as CPC2, LGC and PLEK.
MAPsDb
MAPsDb is a comprehensive database of RNAs identified computationally in 27 MAPs species. We applied several filters to discriminate between non-coding and protein-coding transcripts. MAPsDb has many unique features such as statistical charts, annotated mRNAs, phsiochemical properties, secondary structure, miRNA, gene and SRA data providing convenient data accesses and download engines. We believe MAPsDb is a truly functional knowledgebase and will provide novel insights into Medicinal and Aromatic plant research and benefit the whole research community.
Tools
To facilitate the users, we have incorporated various useful services such as a prototypic peptide prediction (P3) tool, assembly assessment, blast, peptide physicochemical properties prediction (P4) tool and coding potential tool.
Plumbago zeylanica |
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| Genome Info: GCA_000002595.3 | lncRNA: 1223 | Gene: 0 |
| Protein coding RNA: 369 | RNA-Seq: 6 |
Ocimum basilicum |
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| Genome Info: GCA_000002595.3 | lncRNA:6570 | Gene: 131 |
| Protein coding RNA: 5016 | RNA-Seq: 106 |
Crocus sativus |
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| Genome Info: GCA_000002595.3 | lncRNA: 4183 | Gene: 132 |
| Protein coding RNA: 1937 | RNA-Seq: 98 |
Mentha x piperita |
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| Genome Info: GCA_000002595.3 | lncRNA:679 | Gene: 136 |
| Protein coding RNA: 838 | RNA-Seq: 17 |
Aloe vera |
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| Genome Info: GCA_000002595.3 | lncRNA: 80 | Gene: 133 |
| Protein coding RNA: 140 | RNA-Seq: 39 |
Gloriosa superba |
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| Genome Info: GCA_000002595.3 | lncRNA: 35 | Gene: 35 |
| Protein coding RNA: 369 | RNA-Seq: 35 |
Splantago ovata |
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| Genome Info: GCA_000002595.3 | lncRNA: 118 | Gene: 133 |
| Validated lncRNA: 0 | RNA-Seq: 0 |